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Name: Benjamin Warren
Type: User
Company: @powerPlant, @PlantandFoodResearch, @BrightmindsNZ
Bio: Research software engineer, bioinformatician, futurist, and advancer.
Location: Auckland, New Zealand
Benjamin Warren's Projects
adventofcode
My far less than optimal solutions to adventofcode problems
bookdown-project
Template for stand-alone projects using R Bookdown and GitHub workflows
cpan2rpm
A utility to produce RPM packages from CPAN modules
datasciencecoursera
https://class.coursera.org/datascitoolbox-030
datasharing
The Leek group guide to data sharing
edamontology
EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.
efp2
Inspired by eFP Browser - http://www.bar.utoronto.ca/efp/development/
ensembl
The Ensembl Core Perl API and SQL schema
exploring-neural-data
Course Work on Exploring Neural Data
genome-comparator
Compare Custom and Ensembl Genomes
igv-webapp
IGV Web App
knitr-examples
a collection of knitr examples
nerdcommenter
Vim plugin for intensely nerdy commenting powers
nextflow
A DSL for data-driven computational pipelines
nextflow-vim
Nextflow plugin for VIM
nzrse_hackathon_2020
NZ RSE 2020 hackathon: using machine learning to investigate simulation data
open-iterm-or-terminal-here...
Generates an Applescript app that you can put in your Finder toolbar which will open an iTerm or Terminal tab at the current directory.
publish
Collection of various things I deem helpful for publishing
rlinuxmodules
R package that makes linux environment modules available from R
rustlings
:crab: Small exercises to get you used to reading and writing Rust code!
sandpit
A demonstration repository
sdlib
A Python library used to collect shilling detection methods and generate simulated attackers. (for academic use)
singularity.lang
xml syntax file for formatting Singularity recipes in gedit - coopted for Apptainer + Vim
smrnaseq
A small-RNA sequencing analysis pipeline
utils
General Coding Utilities
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