warrenmcg Goto Github PK

abssimseq

Simulate RNA-Seq experiments with explicit definition of the absolute RNA counts (Vignette Coming Soon!)

aggregation

Methods for aggregating p-values

aldex2

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ALDEx2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ALDEx2.

altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for begining-to-end genomic analyses.

compnorm_paper_analysis

Code to reproduce analyses from the Compositional Normalization paper

datasciencecoursera

This contains all files made while taking the Data Science Specialization on Coursera

datasharing

The Leek group guide to data sharing

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

gcd-course-project

This contains the code and README markdown for the Getting and Cleaning Data Coursera course project.

gene-surrounder

Network-based identification of disease genes in expression data: the GeneSurrounder method

junctionseq

The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generation, high-throughput RNA-Seq experiments.

mamabear

The mama bear ensures the cubs are in line!

moab

polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.

practicalml

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

reproducibleresearch_pa1

This contains all the materials needed for Peer Assessment Project #1

sleuth

Inspect kallisto RNA-Seq output

sleuth-cn

Improve Differential Analysis using Compositional Data Analysis

spladder

Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

star

RNA-seq aligner

tdp43_mirna_paper

The steps and scripts needed to reproduce my analysis from the Chen, Feng et al TDP-43 miRNA Paper.

whitening

:exclamation: This is a read-only mirror of the CRAN R package repository. whitening — Whitening and High-Dimensional Canonical Correlation Analysis. Homepage: http://strimmerlab.org/software/whitening/

yeaststarvationdata

Processed Data, Metadata, and Annotations for Marguerat et al. Fission Yeast Data

zfp36l2_paper_analysis

Pipeline for the RNA-Seq analysis of the Zfp36l2 paper