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awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-reproducible-research

A curated list of reproducible research case studies, projects, tutorials, and media

cellxgene_vip

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

incas

An integrative annotator of human Copy Number Variants using functional genomic features

introtogit

Slides and introductiory material for getting started with Git!

momix-notebook

mowgli

Single-cell multi-omics integration using Optimal Transport

multiplexdbnet

a Python/based tool for the construction of MultiLayered Networks from publicly available data

pyntacle

A high performance python package for network analysis based on non canonical metrics

scanpy_usage

Scanpy use cases.

scnet

jupyther notebook comparing reproducibility of single-cell network inference algorithms

scrapcode

compbio notes and unix shell commands

topos

Tissue of Origin Predictor of Onco-Samples

unravel

Plots Meaningful Representations of Complex Networks

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