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3dmol.js

WebGL accelerated JavaScript molecular graphics library

5years

alphafold

Open source code for AlphaFold.

angelo_biosynthetic_genes_analysis

A repository for sharing code and additional data involved in the analysis for the paper

antismash

antiSMASH

art

A machine learning tool to improve the effectiveness of strain engineering in synthetic biology

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

binnacle

biobakery

bioBakery tools for meta'omic profiling

biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

bioconductor.org

Website for bioconductor.org

biopython

Official git repository for Biopython (originally converted from CVS)

camisim

CAMISIM: Simulating metagenomes and microbial communities

checkm

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

codonoptimizer

Codon optimization script built on DNAChisel with RSCU calculation from the CAI module

course_bioinformatics

天津医科大学，生物医学工程与技术学院，《生物信息学》课程资料

coverm

Read coverage calculator for metagenomics

d3-force

Force-directed graph layout using velocity Verlet integration.

dim_reduction

coding test for “genes visualization”

easy-entrez

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

easyamplicon

Easy Amplicon data analysis pipeline

easyshu-wechat

微信公众号【EasyShu】博文配套文件

encode-ccres

Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements

encode_utils

Tools that are useful to any ENCODE submitting group.

encoded

Metadata database for ENCODE project

ermer

fastani

Fast Whole-Genome Similarity (ANI) Estimation

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fhir

FHIR Protocol Buffers

forcedirected

Collection of force-directed drawing algorithms