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applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

channing-galaxy-tools

cloud-automation

Automation for standing up Gen3 commons on AWS, GCP, Azure, and on-prem

deeplearning4j

Deep Learning for Java, Scala & Clojure on Hadoop & Spark With GPUs - From Skymind

edec

EDec (Epigenomic Deconvolution) is a technique that, starting from methylation and gene expression profiles of bulk tissue samples, infers cell type composition of each input sample as well as DNA methylation and gene transcription profiles of constituent cell types.

eris

Error Reduction In Sequencing

founctions

genetic-data-analysis-rcc-1

Research Computing Center introduction to analysis and visualization of genetic data, Part 1

genetic-data-analysis-rcc-2

Research Computing Center introduction to analysis and visualization of genetic data, Part 2

genomics

Some R that I coded for genomic analyses

ggplot

introstat-spring-2017

Course materials for Stat 20 and Stat 131A, Spring 2017, at UC Berkeley

mutation_rate

ncbi_eutility_query_to_graph

Demonstrate a simple example of graph visualization built with Neo4j Aura application using data from NCBI API.

pcawg_tss_breakpoint

predixcan-1

Code for the in-dev PrediXcan Project

predixcan-fw-brca

predixcan_brca_400pt

predixcan_code_share

rna-seq-prrophetic

st205a

Homework for STAT 205A - Berkeley

stat2

Stat2 Introduction to Statistics, UC Berkeley

stat212b

Topics Course on Deep Learning UC Berkeley

stat243-fall-2015

This repository holds all course materials for the fall 2015 offering of Statistics 243 at UC Berkeley.

stat247c

UC Berkeley, Stat 247C, Fall 2015

tcga-ase-analysis-pipeline

TAAP (TCGA ASE Analysis Pipeline): A pipeline that correlates somatic mutation in tumor/normal WGS paired samples with gene-level allele-specific expression in an effort to systematically uncover cis-regulatory variants involved in tumorigenesis.