wanderum Goto Github PK

10x-scatac-2019

Publication Page for Satpathy*, Granja* et al 2019

bda_course_aalto

Bayesian Data Analysis course at Aalto

bleep

Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning

cellchat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

coursera-test

Coursera-test for HTML, CSS and JS

datashader

Quickly and accurately render even the largest data.

dca

Deep count autoencoder for denoising scRNA-seq data

eigenfish

# Eigenfish Ideas by the wonderful ["Computational Discovery on Jupyter"](https://computational-discovery-on-jupyter.github.io/Computational-Discovery-on-Jupyter/index.html) by Neil J. Calkin, Eunice Y.S. Chan, and Robert M. Corless, and the gallery of the [Bohemian Matrices site](http://bohemianmatrices.com).

gsimp

GSimp is a Gibbs sampler-based missing value imputation approach

hexsticker

:sparkles:Hexagon sticker in R

horseshoe-analyses

lilikoi

liveboost

LiveBoost: Clinical prediction of HBV and HCV related hepatic fibrosis

monty-hall-problem

mpal-single-cell-2019

Publication Page for MPAL Paper 2019

multida

High Dimensional Discriminant Analysis in R :sparkles:

multiroc

Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications

mvi-evaluation

Missing value imputation and evaluation, especially for metabolomics data sets

nichenetr

NicheNet: predict active ligand-target links between interacting cells

pancanmet_analysis

Software and analysis of metabolism studies across multiple cancer types

repo-badges

:star: use repo badges (build passing, coverage, etc) in your readme/markdown file to signal code "quality" in a project.

scicnv

Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution

single-cell-metabolic-landscape

Pipeline for exploring metebolic heterogeneity at single-cell resolution

starch

Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity

terra

R package for spatial data handling https://rspatial.github.io/terra/reference/terra-package.html

xenium_benchmarking

Code used to benchmark Xenium