wagnerde Goto Github PK

conda-envs

diaz2019

Analysis of single-cell RNA seq data appearing in Diaz & Wagner et al (Nature 2020)

iscc_shivdasani

scanpy

Single-cell analysis in Python. Scales to >1M cells.

sctools

A collection of Matlab scripts for processing and analyzing single-cell RNAseq datasets

sctools-bash

Bash scripts for formatting FASTQ files

sctools-py

A collection of Python helper functions for scRNAseq data analysis.

stitch

Assembles a graph manifold from time series single-cell RNAseq data

tracerseq

Matlab code for processing inDrops TracerSeq FASTQ files and calculating state-lineage couplings