Comments (5)
Can you provide your pip
version? It looks like this may have been resolved recently based on this comment 14 days ago pypa/pip#4537 (comment)
from vitessce-python.
$ pip --version
pip 19.2.3 from /opt/anaconda3/lib/python3.7/site-packages/pip (python 3.7)
from vitessce-python.
@mccalluc One thing that jumps out to me, and maybe @keller-mark can correct me since you seem to know conda
better than me, is that your pip
version is not localized to the environment. For example all of your paths are something like /opt/anaconda3/lib/
whereas when I have a conda environment, I get something like:
(bioformats) TecRef-LT-A0BC38:~ ilan_gold$ which pip
/usr/local/anaconda3/envs/bioformats/bin/pip
from vitessce-python.
@mccalluc had the vitessce-jupyter-dev
environment been activated in your shell before you ran pip --version
?
from vitessce-python.
@keller-mark Even the logs initially posted seem to have the same issue.
from vitessce-python.
Related Issues (20)
- Refactor data_utils and extras_require HOT 1
- Support BiocPy SingleCellExperiment
- Convert flattened multi-level coordination JSON back to nested dict for `to_python`
- Snakemake pipeline for 10x Genomics Multiome outputs
- Demos for SquidPy example datasets
- Convert spatialdata-plot plotting tree to Vitessce config
- Failed to load model class "Anymodel" HOT 2
- Publish a Vitessce notebook on Posit Connect HOT 11
- AnnDataWrapper - support for obsSpots, obsPoints, etc.
- OmeTiffWrapper - support coordinationValues and fileType: "image.ome-tiff"
- Minimal example for obsSegmentations.json for visualizing polygons in Spatial View HOT 2
- Adding scale bar to spatial view image
- ValueError: data too large for non-BigTIFF file HOT 4
- Additional improvements to adata_to_multivec_zarr function
- Add option for widget to communicate directly with Zarr store (no local HTTP server) HOT 2
- Bumping supported Anndata Version? HOT 1
- Support automatic instantiation of Wrapper objects HOT 2
- Support using JSX for writing plugin views
- Setting colors for obsSets? HOT 2
- Helper function to use adata.uns[obs_set_col + "_colors"] for initial obs set colors
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from vitessce-python.