Comments (1)
Damn unexpected behavior in AddModuleScore()
....
As explained:
Is your
genes.list
input a vector of gene names? If yes, then you'll get an independent score for each gene. To get a single score, your input should be a list of a character vector of gene names.# Create a list of a vector of gene names for score computing genes.for.scoring <- list(c("Actb", "Gapdh", "Rps9")) # Create Stemness score using 'genes.for.scoring' object <- AddModuleScore(object = object, genes.list = genes.for.scoring, enrich.name = "StemnessScore", random.seed = 1)
So now I added list()
obj <- AddModuleScore(object = obj, features = list(genes.GO), name = ScoreName)
from seurat.utils.
Related Issues (20)
- saveRDS.compress.in.BG does not execute gzip command HOT 1
- Thresholding in scBarplotFractionAboveThr is wrong: count above 0 gives 100% even at HOT 2
- calc.q90.Expression.and.set.all.genes creates all.genes without gene names! HOT 1
- In `clUMPA()` function `is_null()` is not defined HOT 1
- In `GetClusteringRuns()` the function `grepv()`is not defined - dependency error? HOT 1
- clUMAP wont save PDF, because it wants to (add a complex) subtitle to filename
- qUmap error with HGNC.lookup HOT 1
- Error in parse(outFile) : unexpected end of input HOT 11
- Generalization of RenameGenesSeurat for other data types and slots HOT 2
- Seurat.utils installation fails after troubled installation of dependencies (gdata dependency 3.0 removed a function you used before) HOT 2
- Installation error in devtools::install_github(repo = "vertesy/Seurat.utils", upgrade = F) HOT 5
- Error in RenameGenesSeurat HOT 10
- Error installing Seurat.utils after dependencies HOT 3
- qMarkerCheck.BrainOrg saves empty plots HOT 1
- Slot 'all.genes' does not exist in obj@misc. HOT 2
- rename error when use RenameGenesSeurat HOT 6
- .parseKeyParams should be tolerant to missing p variable and jsut return NULL
- AutoNumber.by.UMAP does not correctly order clusters HOT 4
- plotGeneExpHist is broken (seu v5?) → renamed to: plotGeneExprHistAcrossCells HOT 1
- downsampling in `scBarplot.CellFractions` works unexpectedly: if the 5% thr is used, it does not "upsample" smaller categories HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from seurat.utils.