Comments (2)
It does it already. The problem is with the default quantile cutoff at .95: small subpopulations are cutoff fully
from seurat.utils.
Followed up in #28
from seurat.utils.
Related Issues (20)
- Error in parse(outFile) : unexpected end of input HOT 11
- Generalization of RenameGenesSeurat for other data types and slots HOT 2
- Seurat.utils installation fails after troubled installation of dependencies (gdata dependency 3.0 removed a function you used before) HOT 2
- Installation error in devtools::install_github(repo = "vertesy/Seurat.utils", upgrade = F) HOT 5
- Error in RenameGenesSeurat HOT 10
- Error installing Seurat.utils after dependencies HOT 3
- qMarkerCheck.BrainOrg saves empty plots HOT 1
- Slot 'all.genes' does not exist in obj@misc. HOT 2
- rename error when use RenameGenesSeurat HOT 6
- .parseKeyParams should be tolerant to missing p variable and jsut return NULL
- AutoNumber.by.UMAP does not correctly order clusters HOT 4
- plotGeneExpHist is broken (seu v5?) → renamed to: plotGeneExprHistAcrossCells HOT 1
- downsampling in `scBarplot.CellFractions` works unexpectedly: if the 5% thr is used, it does not "upsample" smaller categories HOT 1
- invert in subsetSeuObjByIdent is not working
- UpdateGenesSeurat results in Error in .make_numeric_version(x, strict, .... HOT 2
- Installation requires DatabaseLinke.R
- removeResidualSmallClusters fails HOT 1
- Error in RenameGenesSeurat HOT 2
- qClusteringUMAPS naming is NA's
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from seurat.utils.