Comments (2)
I will fix but that function will be deprecated
from velocyto.py.
fixed
from velocyto.py.
Related Issues (20)
- When and when not to use "repeat annotation mask" in 10X?
- how do i generate the repeat sequences masked gtf file from Ensembl?
- index file HOT 1
- OSError: truncated file is occured in cellranger-5.0.1-dirty output.
- WARNING - The .bam file refers to a chromosome not present in the annotation (.gtf) file HOT 4
- velocyto on filtered or raw matrix or from matrix corrected ?
- Inquiry on the input for running "velocyto run10x"
- Using spatial transcriptomics data on Velocyto.py generates lower counts than Space Ranger
- Additional gene problem
- Seems like a typo.
- Mark spliced/unspliced reads on original BAM file
- Incorrect trimming of chromosome name leads to IOError(f"Input .bam file should be chromosome-sorted. (Hint: use `samtools sort {bamfile}`)") HOT 3
- How to get fastq header information of spliced and unspliced 10X short reads
- Package dependency problem on NumPy HOT 2
- Velocyto ran successfully but main matrix is missing HOT 2
- Memory & run time issue run10x HOT 1
- When calculate the unspliced reads, does UTR region included or not?
- Retriving genes with caracterisitic velocity behavior accorindg to latent time
- Merging multiple loom files with different reference genome
- Integrating Ambient RNA Removal (CellBender) into Velocity Analysis
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from velocyto.py.