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adventofcode

Mostly Rust solutions for the Advent Of Code.

faimm

Rust crate that provides random access to indexed fasta using a memory mapped file.

fastq-rs

filelist

Lazy-evaluating list of files, based on globs or regex patterns

flate2-rs

FLATE, Gzip, and Zlib bindings for Rust

gatk

GATK Official Release Repository

itertools

Extra iterator adaptors, iterator methods, free functions, and macros.

nclist

Rust crate for finding overlapping intervals using a nested containment list

noodles

Bioinformatics I/O libraries in Rust

p1pi

Read, store and graph data from a P1 serial port

rle_vec

A rust crate providing a vector like struct that stores data as runs of identical values.

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.