Comments (2)
Thanks @truatpasteurdotfr
We try to be as transparent as possible. Since AMDock was our first software, it may have some problems of this kind. According to the vulnerability analysis, AMDock does not present any, however, I will try to modify install.sh or be more explicit in the documentation.
The installation of AMDock requires access to the system's Python modules folder as this folder requires administrator write rights. We could modify it to install in an external folder that does not require the sudo command, but it would increase the risk of conflicts in PYTHONPATH variable
The new version of AMDock is modular, so this will not be required.
Thank you very much for the suggestions, we will certainly take them into account
Best!
Mario S.
from amdock.
We have quite a lot of python, pymol installed side by side and unless it is your own laptop/development machines, users are seldom allowed to "sudo". If you have users using conda, they already own the python libraries and don't need sudo for installing additionnal librairies. Furthermore, running sudo without being authorised, is usally ringing an alarm for the sysadmin.
Just my 2 cents.
Best regards
from amdock.
Related Issues (20)
- Protein ligand docking using AMDock was unsuccessful HOT 1
- Unable to execute HOT 18
- Problems running the shell script on ubuntu 20.04 HOT 3
- version `GLIBCXX_3.4.26' not found HOT 1
- error in Running Prepare_Receptor4... HOT 1
- New version unable to execute HOT 2
- error with prepare_receptor4 HOT 8
- Using PyMOL installed with macport on macOS 10.13.6? HOT 10
- AMDock macOS 10.13.6 issue
- 'Segmentation fault: 11' error when quit AMDock on macOS 12 HOT 1
- Unable to start AMDock HOT 2
- Could not use the docked output on WebGro for Dynamics
- please add M1 apple support HOT 2
- unable to install HOT 6
- Unable to install HOT 1
- TypeError: setValue(self, value: int): argument 1 has unexpected type 'float'
- Feature Request
- Fail to install on Ubuntu 22.04 using the OS Python 3 environment
- many versions of pymol not working HOT 1
- Docking ligands with exotic metals
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from amdock.