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addit icon addit

Imputation tool for missing genotype data in model and non-model species

charming icon charming

Contains CHARMING.py and its associated README.md

eps-ml icon eps-ml

Code for the EPS-ML project submitted for publication

hapler icon hapler

Robust determing of haplotype regions from aligned (assembled) diverse sequence data

hecil icon hecil

Hybrid Error Correction of Long Reads using Iterative Learning

hellingerdist icon hellingerdist

Code from Rider et al. to use HD to uncover eQTLs; hellingerDist measures the hellinger distance between pairs of distributions

hot-rad icon hot-rad

HotRad code used for ND RAD analysis papers

invdet icon invdet

Inversion detection using Pacbio long reads

metaassem icon metaassem

Paul Baranay's code used to finish in 1st for Assemblethon 2 for one genome; depreciated

mle-phi icon mle-phi

This repository includes the methods needed to calculate MLE-phi, which can be used to estimate global and local translation rate of give protein coding sequence

smsc icon smsc

single molecule scaffolding of reference genomes

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