Comments (1)
Issue resolved with this commit d7b1c039e80b0f03faf78dc0801f11ec570141dd
from prot-scriber.
Related Issues (20)
- Remove deprecated code in Hit and related HOT 1
- Clean up and improve performance of `generate_HRD_associated_funcs.rs` HOT 2
- Check for empty input vectors and hashmaps in functions of module `generate_hrd_associated_funcs.rs` HOT 1
- Use `String` instead of `&str` in module `generate_hrd_associated_funcs.rs` HOT 2
- Implement `TODO` "Do not use more threads than user specified, even if more Blast tables are to be parsed HOT 1
- Add information on how to generate gene families to the `.about` in `main.rs` HOT 1
- For equally scoring `phrases` find a deterministic mode of selecting one HOT 1
- When generating the human readable description only add phrases that have not already been scores.
- Generate regular expression for parsing UniRef HOT 1
- Improve error messages' print out HOT 1
- Consider phrases consisting only of non-informative words "unknown protein" or "unknown family" HOT 1
- Add a command-line option to exclude "unknown protein" or "unknown sequence family" from results HOT 1
- Performance evaluation HOT 1
- Wrong annotations in prot-scriber HOT 3
- Manually check the "universe" word list generated from Pfam-A and Mercator (Mapman Bin) reference annotations HOT 2
- Rerun evaluations HOT 3
- Optimisation of generated HRDs HOT 2
- Annotation typo HOT 2
- Test different performance calculation
- Add optional input support HOT 2
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from prot-scriber.