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bctpy

brain connectivity toolbox for python

binarynet.pytorch

Binarized Neural Network (BNN) for pytorch

brainnetworkmodels

Matlab code which was the basis of TheVirtualBrain scientific library.

cana

CANAlization: Control & Redundancy in Boolean Networks

cirq

A python framework for creating, editing, and invoking Noisy Intermediate Scale Quantum (NISQ) circuits.

coleanticevicnetpartition

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

communitydetectioncodes

Some overlapping community detection algorithms (Until 2016). by Yulin Che (https://github.com/CheYulin) for the PhD qualification exam (survey on community detection algorithms)

connectomics

covid_shield_immunity

Modeling the Role of ‘Shield Immunity’ in Reducing COVID-19 Epidemic Spread

cupy

NumPy-like API accelerated with CUDA

deepesn

Deep Echo State Network (DeepESN) Python library

dsi-studio

Diffusion MRI analysis tool

dynamic_brain_connectivity_analysis

This repository will cover our developed algorithms and techniques for dynamic brain connectivity analysis.

dynasim

DynaSim toolbox for modeling and simulating dynamical systems

echo-state-network

Matlab implementation of Echo State Network (reservoir computing)

echotorch

A Python toolkit for Reservoir Computing and Echo State Network experimentation based on pyTorch. EchoTorch is the only Python module available to easily create Deep Reservoir Computing models.

esn-optmod

Code for "Optimal modularity and memory capacity of neural networks" paper.

exploratory_analysis_tool_app

Exploratory Analysis Tools Application

finder

FINDER - FInding key players in complex Networks through DEep Reinforcement learning (Nature Machine Intelligence)

gnnpapers

Must-read papers on graph neural networks (GNN)

graphgen

Generates various kinds of graphs including LFR benchmarks, HMNs, and SBMs.

gtc2017-numba

Numba tutorial for GTC 2017 conference

hcppipelines

Processing pipelines for the HCP

high-performance-python-course

A course explaining how to profile, optimise and parallelise your Python code, and run it on the cloud and HPC.

intro-to-rnaseq-hpc-o2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

km_config

An algorithm for finding multiple core-periphery pairs in networks.

lfrwmx

Matlab wrapper for weighted Lancichinetti-Fortunato-Radicchi benchmark graphs

mrtrix3

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

myconnectome

Code for the myconnectome project

myconnectome-vm

Virtual machine setup for MyConnectome data analysis