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ask-agent-duo

Defer to duosecurity for ssh key usage from ssh-agent

awk_course

Teaching material for the UPPMAX Awk course

benchmark-codes

Repository for benchmark codes that can be used to measure and compare computational and/or communication performance of different systems.

bianca_workshop

bio-data

Scripts and routines for retrieval and maintenance of biologically-relevant data resources for UPPMAX

cloud-tests

Repository intended for test scripts and similar things related to performance tests and other kinds of tests of cloud systems, e.g. Smog at UPPMAX.

cloudgene

Cloudgene is an open-source platform to improve the usability of MapReduce programs by providing a graphical user interface for the execution, the import and export of data and the reproducibility of workflows on in-house and rented clusters, i.e. in the cloud. The aim of Cloudgene is to build a standardized graphical execution environment for currently available and future MapReduce programs, which can all be integrated by using its plug-in interface.

cluster_api

A simplistic "API" consisting of bash / python scripts that return various information about the cluster, and the current logged in user, for easy digestion by external applications.

darsync

Helper script to migrate data to Dardel

filesize_stats

Makes statistics from all project directories.

galaxy-tools-barebone

A bunch of galaxy tool configuration files, wrapping the binaries themselves, thus not depending on any python wrappers.

hpc-python

https://uppmax.github.io/HPC-python

install-methods

Install methods for UPPMAX modules plus some helper scripts

irods

Project for implementing an iRODS infrastructure on UPPMAX / SciLifeLab

irods_util_scripts_old

Archive of some old util scripts developed for iRODS. Uploaded here for reference.

jobstats

UPPMAX jobstats script

jobstats_data_collector

The scripts that summarizes the jobstats data

keystone-dropbearauth-backend

Backend for keystone to verify passwords with dropbear ssh connection

langtech_workshop

Workshop for language technology students

libnss-cache

a NSS module for reading directory service information for Linux hosts from an indexed, local disk cache

modules.sf.net

Adhoc software "packaged" for the ancient and deprecated "module system" (http://modules.sf.net/)

nsscache

asynchronously synchronise local NSS databases with remote directory services

offline-uppmax-env

A container that looks like uppmax but can be run completely offline.

openblas

OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.

programming_formalism-automated_testing

https://uppmax.github.io/programming_formalism-automated_testing/

programming_formalisms

Repository for the Programming Formalisms course

programming_formalisms_intro

Programming formalisms intro

project_portal

Script used to generate the project portal.

python-at-uppmax

Intro to Running and installing custom Python packages at UPPMAX

r-python-julia-hpc