Comments (15)
rbeucher
commented on July 29, 2024
I am working on it
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brmather
commented on July 29, 2024
The tests are still failing, and from the error messages it looks like conda must be installing some version of quagmire without QuagMesh. I think we should have separate actions for testing with pytest and building a Quagmire binary to upload to the cloud. The former should run on every push, the latter on every push to the master branch.
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lmoresi
commented on July 29, 2024
Agreed - the tests can’t be based on an uploaded version or there will be a race condition.
Binaries really should update on a release rather than a push.
Prof Louis Moresi
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www.moresi.info<http://www.moresi.info/>
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@LouisMoresi<https://twitter.com/LouisMoresi>
On 28 May 2020, 4:17 PM +1000, Ben Mather <[email protected]>, wrote:
The tests are still failing on the test stage, and from the error messages it looks like conda must be installing some version of quagmire without QuagMesh. I think we should have separate actions for testing with pytest and building a Quagmire binary to upload to the cloud. The former should run on every push, the latter on every push to the master branch.
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rbeucher
commented on July 29, 2024
All right, my bad, it was still getting quagmire from my branch.
I have made the changes.
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brmather
commented on July 29, 2024
I can't seem to install petsc binaries with a fresh conda install (using a miniconda3 docker container).
conda install -c underworldcode petsc
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
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lmoresi
commented on July 29, 2024
Unclear why that should be - a completely clean environment ?
Prof Louis Moresi
[email protected]
(m) +61 4 0333 1413
(us) +1 505 349 4425
www.moresi.info<http://www.moresi.info/>
www.facebook.com/underworldcode<http://www.facebook.com/underworldcode>
@LouisMoresi<https://twitter.com/LouisMoresi>
On 29 May 2020, 2:13 PM +1000, Ben Mather <[email protected]>, wrote:
I can't seem to install petsc binaries with a fresh conda install (using a miniconda3 docker container<https://hub.docker.com/r/continuumio/miniconda3>).
conda install -c underworldcode petsc
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
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brmather
commented on July 29, 2024
That's right. More output:
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
Package _libgcc_mutex conflicts for:
petsc -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex=[build=main]
python=3.7 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex=[build=main]
Package libstdcxx-ng conflicts for:
petsc -> metis[version='>=5.1.0,<5.2.0a0'] -> libstdcxx-ng[version='>=7.2.0|>=7.3.0']
petsc -> libstdcxx-ng[version='>=7.5.0']
Package libgcc-ng conflicts for:
petsc -> libgcc-ng[version='>=7.5.0']
petsc -> metis[version='>=5.1.0,<5.2.0a0'] -> libgcc-ng[version='>=7.2.0|>=7.3.0']
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rbeucher
commented on July 29, 2024
Yeah... I can't either. Well I can install petsc fine. But I struggle with quagmire. !!!!!
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rbeucher
commented on July 29, 2024
I think I need to build it with more flexible settings.
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lmoresi
commented on July 29, 2024
It would probably work just fine if you removed the hdf5 options
On 29 May 2020, 2:33 PM +1000, Romain Beucher <[email protected]>, wrote:
I think I need to build it with more flexible settings.
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brmather
commented on July 29, 2024
What I don't understand is that installing the conda-forge petsc pulls in hdf5, but petsc doesn't compile against it.
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rbeucher
commented on July 29, 2024
Looking at it now. QUAG-3 QUAG-4
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rbeucher
commented on July 29, 2024
OK comes from h5py that does not have a build with HDF5 1.10.6.
They seem to have some issues with windows. We can build our own h5py in our channel for now.
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brmather
commented on July 29, 2024
Fingers crossed PR conda-forge/h5py-feedstock#72 is merged soon!
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brmather
commented on July 29, 2024
#28 has been merged into dev. Thanks @rbeucher for all your hard work getting conda to work with Quagmire! I'm closing this issue...
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Related Issues (14)
- Randomise x, y vectors HOT 1
- Create a custom petsc4py with HDF5 on conda HOT 2
- Move Notebooks to a different repo HOT 1
- Pixmesh Octopants issue HOT 1
- My annoying function HOT 1
- Saving / load of states with `.quag` files
- Setting downhill neighbours HOT 4
- Error importing stripy after underworld HOT 1
- Fix pixmesh XDMF file writer
- Radians or degrees
- I am hungry, can we go for lunch? HOT 1
- loading into a locked mesh variable. HOT 1
- Extended neighbour cloud HOT 5
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