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nephantes avatar nephantes commented on August 10, 2024
  1. You don't need transcript column. If you have unique gene IDs/names in the first column and raw counts in the other columns, it should work.
  2. If you don't want to do batch effect correction, you don't need to define the batch column or upload the second metadata file. Metadata file has two functionality, one of them is for batch effect correction, the second one is for choosing the conditions faster in DE.
    Thanks for pointing out, I have fixed the documentation for these two issues.

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johanneswerner avatar johanneswerner commented on August 10, 2024

thank you very much

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