Comments (2)
- You don't need transcript column. If you have unique gene IDs/names in the first column and raw counts in the other columns, it should work.
- If you don't want to do batch effect correction, you don't need to define the batch column or upload the second metadata file. Metadata file has two functionality, one of them is for batch effect correction, the second one is for choosing the conditions faster in DE.
Thanks for pointing out, I have fixed the documentation for these two issues.
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thank you very much
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Related Issues (20)
- Export analysis to code to guarantee reproducibility HOT 2
- Sorry, there was a problem downloading your snapshot HOT 6
- error in uploading file HOT 4
- Images in README.md broken? HOT 1
- where's you getNormalizeMatrix function? HOT 3
- the normalization method of MRN and TMM HOT 3
- error in uploading file to DEBrowser HOT 2
- Error in DESeqDataSet : counts matrix should be numeric, currently it has mode: character HOT 4
- upload error HOT 1
- Tables: is there a way to download a table of only non-significant genes? HOT 1
- d3heatmap R4.0.0
- Warning: Error in writeImpl: Text to be written must be a length-one character vector HOT 2
- GO or KEGG analysis HOT 1
- RNA seq analysis
- DEbrowser run error in dots_list HOT 2
- debrowser_error HOT 3
- Issue with shrinkage options in DESeq2 from DEBrowser HOT 8
- GOterm analysis for Arabidopsis not working HOT 1
- GOTerms not working for Homo Sapiens HOT 4
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