uiucsinhalab Goto Github PK

aster

Analysis of SNPs Targeting Evolutionary Rates

autotools-unittest

The autotools-unittest is a minimal starter kit when writing C++ library with autotools, google test and google mock.

cismetalysis

cppexperiments

A cannonical place to store C++ example code / experiments that will allow us to pin down certain behaviours. Then we can approach our other projects with confidence.

crmfinding

d2z

dips

enhancer-activity-predictor

evolsimul

gemstat

Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

gemstat-gl

gemstat_refinement_sampler

A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

gemstat_scripts

Various task-agnostic scripting language tools for dealing with GEMSTAT.

indelign

lab-docker

Docker Containers used in the lab

linuxbrew

A fork of Homebrew for Linux

lncrnarn

Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptomic data".

mop

phyme

scrmshaw

sergio

sinhalab_infrastructure

Workaround because we have an ancient Linux distribution

snot_lang

Simple Numerical Object Transcription (SNOT) is a language similar to JSON meant for numerical computing.

stap

A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data. http://www.ncbi.nlm.nih.gov/pubmed/19956545

stemma

stubb

swan

varsan