ucdenver-ccp Goto Github PK

aarti_repo

allennlp

An open-source NLP research library, built on PyTorch.

biomedner

a fork of: http://biomedner.googlecode.com/svn

biorxiv-aws

AWS Lambda code for retrieving and extracting bioRxiv articles

bluebert

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

brat-docker

containerised brat (http://brat.nlplab.org/)

cartoomics

ccp-extension-ontology

An ontology of extension classes grounded in the OBOs

ccp-nlp

A library of NLP related code

ccp-nlp-pipelines

A collection of NLP pipelines including pipelines that use the UIMA ConceptMapper to annotate text with concepts from the Open Biomedical Ontologies

common

a library of utility code for a variety of "common" tasks

concept-recognition-as-translation

concept-recognition-as-translation-conceptmapper-baseline

Code and data used to generate baseline concept normalization data from the CRAFT corpus using ConceptMapper

cpbs7785

Code for Mechanistic Inference class

craft

craft-shared-tasks

This repository hosts evaluation scripts for evaluating annotations of various types against the CRAFT corpus.

craft-st-2019

Repository for the test data used in the 2019 CRAFT Shared Tasks

crfpp

fork of https://code.google.com/p/crfpp/source/checkout

datasource

A library of code for parsing (mostly biomedical) data source files and converting their contents to RDF

documentmetadataapi

drug_drug_interactions_with_kabob

Companion repository to "A semantic knowledge-base approach to drug-drug interaction discovery" by Tripodi et al

emnlp2017-bilstm-cnn-crf

file-conversion

Conversion utility for various NLP-related file types

gpt-2

Code for the paper "Language Models are Unsupervised Multitask Learners"

ignorance-base

ignorance-question-corpus

ignorance-question-work

Epistemic/Questions corpus and classification information

ignorance-question-work-full-corpus

kabob

KaBOB (Knowledge Base Of Biomedicine)

kabob-query