Comments (1)
hi, I 've downloaded and repeated your code successfully, then I got three clustering results called NMI,CA and ARI.but how can I find clustering information of every cell such as
Fig. 3: Benchmark results on four real scRNA-seq datasets with true labels-b
fig
Hi,
In the end of scDeepCluster.py script, the line 401
y_pred = scDeepCluster.y_pred
You can just output and save the y_pred to a file you want, such as
np.savetxt("pred_y.txt", y_pred, delimiter=",", fmt="%I")
You can also check my pytorch implementation, where I add an argument setting file name to store the predict labels. Check:
https://github.com/ttgump/scDeepCluster_pytorch
Best,
Tian
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Related Issues (9)
- jupyter notebook cannot be loaded HOT 2
- how to get the optimal value of cluster ? HOT 2
- some question about "code" HOT 6
- why does your model run on cpu definitely? HOT 1
- ImportError: cannot import name 'extension_dict' HOT 1
- repeat results HOT 1
- scDeepCluster in HPC HOT 4
- reproduce tutorial.ipynb HOT 3
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