Comments (3)
tseemann
commented on June 2, 2024
@scholzmb Are you able to help me to build a static version of bgzip and tabix ?
I've had trouble in the past.
If you have bgzip in your PATH it will use that first, before the bundled binaries.
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tseemann
commented on June 2, 2024
I've replaced some of the binaries with those from here:
https://sourceforge.net/projects/biobin/files/
They are mostly static and built on older glibc from Centos 5.
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tseemann
commented on June 2, 2024
In https://github.com/tseemann/snippy/tree/version_4 I am not producing .bgz files anymore.
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Related Issues (20)
- error HOT 4
- Can't run snippy-core with more than 1 CPU
- libtabixpp.so.0: cannot open shared object file HOT 4
- Using Snippy to identify the delete which is about 1kb to 5kb
- snippy-multi ERROR: Could not find .aligned.fa/.vcf in 100AEA1 HOT 5
- Possible to set %identity of reads mapping to ref?
- samtools excluded most reads HOT 1
- Number of contigs mismatch when generated from gbk file
- Files to test an installation
- Error running snippy
- Which alignment file can be used to create SNP matrix for clonal studies
- How to use snippy with pre-indexed reference
- Snippy: no output - identification of 0 variants and empty csv file
- Snippy fails with genbank file HOT 2
- ™ BrokenPipeError: [Errno 32] Broken pipe, can you please assist for this error HOT 1
- Cannot install snippy due to bcftools?
- vcfstreamsort: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory vcfuniq: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory HOT 3
- freebayes-parallel Error HOT 1
- bcftool error HOT 1
- Unable to calculate estimated library size: samtools markdup
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