tripitakit / bioseq.js Goto Github PK

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BioSeq.js
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Javascript implementation of a biomolecular sequence object, standard
functions/methods for sequence manipulation, and I/O for the FASTA format.

Designed for server-side Javascript, namely Node.js. I'm not sure what tweaks
are needed to make it useful client-side.


Contents
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Functions:
    letterCounts, letterFrequencies
    complement, reverseComplement
    transcribe, backTranscribe
    translate, translate3frames, translate6frames

Sequence class:
    - Attributes are data (the character sequence), sequence id, sequence
      description, alphabet, features, and arbitrary annotations (the last three
      don't do anything yet)
    - Methods are all the above functions

I/O:
    FASTA