Comments (1)
Hello,
BATH uses HMMs as input files or the protein query. The output is the set of alignments for all the hits between those queries and the DNA target sequences. You can also request a tabular version of all the hits using the '--tblout' flag. There are no plans to produce a gff format output but you should be able to convert the tabular output to a gff file with a simple post-processing script.
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Related Issues (7)
- install issue and core dump HOT 7
- interpreting frahmer output HOT 1
- config.status: error: cannot find input file: `profmark/Makefile.in' HOT 3
- Typo HOT 2
- linker errors HOT 8
- Segmentation fault HOT 2
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from bath.