Comments (3)
Adding this option will provide increased compatibility with other tools, e.g. Deren Eaton's PyRAD.
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When this option is in effect only errors or warnings should be printed to stderr.
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VSEARCH 1.1.0 supports options --quiet and --log
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Related Issues (20)
- add a DEBUG compilation option HOT 4
- Update log file output for --chimeras_denovo command HOT 1
- always report the rightmost match if multiple equivalent occurrences are present in target sequence? No. HOT 5
- compilation warning with ar: 'u' modifier ignored since 'D' is the default HOT 2
- sintax output is sometimes 4 columns and other times 5 columns HOT 3
- fastq_stripleft when the resulting length is null?
- forward read trimming and filtering (Minardi et al. 2021) HOT 1
- control of 2 separate randseed events in sintax HOT 4
- from fasta files to an OTU table HOT 1
- --uchime_denovo takes abundance information into account HOT 1
- how to detect matches containing many ambiguous symbols? HOT 1
- more compile-time checks HOT 2
- Issue encountered when using vsearch --usearch_global to generate OTU frequency table HOT 3
- clean-up stale branches HOT 1
- --makeudb_usearch truncates fasta headers HOT 3
- maxseqlength is not supported by uchime_denovo command HOT 6
- vsearch --usearch_global not showing "full alignment" instead only the segment pair HOT 3
- vsearch --top_hits_only --maxaccepts 1 returns sometimes 2 values HOT 6
- Issue related to usearch_global match HOT 4
- missing userfields options
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