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academic-kickstart

acquisition

Acquisition

bmtk

Brain Modeling Toolkit

cellsort

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

dataczar

A suite of utilities for managing lab code and data.

deeplabcut

Markerless tracking of user-defined features with deep learning

dm_control

Google DeepMind's software stack for physics-based simulation and Reinforcement Learning environments, using MuJoCo.

efficient_subpixel_registration

from http://www.mathworks.com/matlabcentral/fileexchange/18401-efficient-subpixel-image-registration-by-cross-correlation

fanc_auto_recon

Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset

flyanalysis

Analysis routines for data gathered with FlySound acquisition package

flysongsegmenter

Signal in, sine and pulse song out

flysound

Fly sounds

gvision

Video & image acquisition and experiment control for behavior neuroscience

impactofreproducibility

Theoretical approach to understanding the impact of reproducible responses in a linear-nonlinear convergent network

jsonlab

JSONLab: a native JSON/UBJSON/MassagePack encoder/decoder for MATLAB/Octave

labelselectedframesfordlc

Simple script to label imgXXX.png images for training sets for DLC

matlab-analysis

Code to port to different machines

ovation-matlab

Ovation Matlab API and utilities

parametersdb

ParametersDB creates and stores a Pandas representation of the parameter database

ptitprince

python version of raincloud

pypylon

The official python wrapper for the pylon Camera Software Suite

raincloudplots

Code and tutorials to visualise your data that is both beautiful *and* statistically valid

reproducibility

roth-peranson

A python implementation of the nobel prize winning matching algorithm.

rtd-tutorial

spikedetection

Interactively detect spikes in D mel data

statistical-analysis-python-tutorial

Statistical Data Analysis in Python

symphony-core

Symphony data acquisition system core libraries

symphony-ui

MATLAB interface for the Symphony .NET framework

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