tom-f-oconnell Goto Github PK

al_imaging

Code to run imaging experiments and analyze data.

alicat

Python driver and command line tool for Alicat mass flow controllers.

alicat_flow_control

ros package for controlling alicat flow controllers

ansible-nas

Build a full-featured home server or NAS replacement with an Ubuntu box and this playbook.

ard01

ROS node for trackball data acquisition, from two optic flow sensors and cameras.

arduino_daq

Get analog data to your computer with Arduino and Python.

arrell

Implementing some reinforcement learning algorithms for practice.

ball_calibration

Python scripts to calibrate the sensors for ball experiments.

bi195

Bi195 - mathematical biology

boardgame_helper

To have your computer watch board games (starting with Risk) and recommend moves.

bootcamp

Caltech Introduction to Programming for the Biological Science Bootcamp

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

caltech_name_checker

chemspipy

Python wrapper for the ChemSpider API

choice

Design files and code for an automated two choice olfactory assay with Drosophila.

cns187

CNS187 -- Neural Computation

cpython

The Python programming language

crimpd_plotter

Plots training progress from CSVs exported from the Crimpd app.

deltabot

Calculations to help design delta bots, a common parallel robot design for pick and place machines, as well as the fly handling robot from the 2015 Nature paper.

door_python

Scripts for loading DoOR responses (from R) into Python, as well as checking / processing them.

dotfiles

Linux configuration files.

drosolf

Cell responses, transformations, and cell type information useful in Drosophila olfactory neuroscience.

emily_ye_summer

Tracking analysis code Emily worked on for her rotation, uploaded here for reference.

enigma

For simulating enigmas and historic attempts to defeat them.

firepick-delta

Design and Manufacturing Specifications for FirePick Delta

flask_vue_sio_example

Simple bare minimum example demonstrating how to use flask, vue and socketio together.

flypush

For maintaining information on Drosophila bottles / vials, with a combination of an SQL database and a label printer.

fmech

freecad_finder

Finds installed FreeCAD libraries and adds them to Python sys.path, for use in standalone scripts.

freewalk

ROS package to wrap tracking and stimulus delivery for Kristina's behavior experiments.