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cell2fate

Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.

compassr

An R library for conducting analyses on COMPASS data.

cs206

CS 206 Evolutionary Robotics

flapjack

A bulk RNA seq analysis pipeline run from the command line with embedded from sourced R script

hpa_analysis

pipeline for HPA experiment

lanserliger

liger

R package for integrating and analyzing multiple single-cell datasets

scgenefit-python

Python code for genetic marker selection using linear programming

scmiko

R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.

velocyto.r

modified velocyto code stack that *should* work