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3d-clump

Software to test for clustering of missense variants in 3D protein structures.

aces

ACES is a workflow to query small sequences in a large set of genomes. It provides several outputs including BLAST results, a multiple sequence alignment file, a graphical fragment assembly file, and a phylogenetic tree file.

acorn

acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.

clustering_in_cancer_vs_ndd_paper

elgenomapequeno

El genoma pequeño - analysis workflow for "the little genome"

fitdnm

Code for running fitDNM genome-wide by using Snakemake

gpu_accelerated_de_novo_workflow

HARE is the GPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.

hare

A de novo variant caller leveraging Parabricks GPU accelerated variant calling

hat

HAT is a set of tools for calling de novo variants from whole-genome sequencing data.

ht22_genome_epigenome_functional_genomics_project

pyrus

PYRUS is a plotting tool that uses tabix files to create line graphs from bed file data. Utilization of PYRUS includes having a quick plotter for copy number variation within a given chromosomal range of a referenced bed file.

revio_n2a

TNTurnerLab Code for Revio Neuro-2a paper

tortoise

Tortoise is the CPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.

wdl_workflows

wtc-11

WTC-11 Genome Cell Line Analysis