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avro

Apache Avro is a data serialization system.

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

beam

Apache Beam

commons-cli

Mirror of Apache Commons CLI

ensembl-vep

The Variant Effect Predictor predicts the functional effects of genomic variants

fhir-py

Python utilities for working with FHIR, including libraries to build simple, flat FHIR views in BigQuery.

gcp-deepvariant-runner

This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.

gcp-variant-transforms

GCP Variant Transforms

gcp-variant-transforms-java

guava

Google core libraries for Java

guice

Guice (pronounced 'juice') is a lightweight dependency injection framework for Java 6 and above, brought to you by Google.

healthcare-data-harmonization

This is an engine that converts data of one structure to another, based on a configuration file which describes how. There is an accompanying syntax to make writing mappings easier and more robust.

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

htslib

C library for high-throughput sequencing data formats

htslib-plugins

Plugins for use with HTSlib

new-project

This repository contains a template you can use to seed a repository for a new open source project.

nucleus

Python and C++ code for reading and writing genomics data.

pipelines-tools

Tools for developing and running pipelines with the Genomics API

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

pyvcf

A Variant Call Format reader for Python.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

vcfpy

Python 3 library with good support for both reading and writing VCF