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abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

ai-astar-lisp

A* algorithm implementation of the 8-puzzle, and cannibals and missionaries problem

bids-app-host

An S3/ECS wrapper container for managing BIDS apps on ECS clusters.

bids-validator

Validator for the Brain Imaging Data Structure

bids_scripts

bidshcppipelines_status

cabinet_bibsnet_modification

This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model for the purposes of circumventing JLF within Nibabies.

computational-techniques-in-genomics

connectome_conv_net

Connectome-convolutional neural netvork for connectivity-based classificatin

cortado

corticalflow

cpac

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

dcan-nn-unet

Utility programs created for using nn-UNet on ABCD data.

dcan_bold_processing

functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelines

deepreg

Medical image registration using deep learning

dlbook_exercises

Exercises for the Deep Learning textbook at www.deeplearningbook.org

docker-cbrain

Docker images for CBrain

dockerfile-templates

Dockerfile templates commonly used in BIDS Apps

fastpredictiveimageregistration

Source code for X. Yang et al., "Fast Predictive Image Registration"

fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

fsl_fix

FMRIB's ICA-based Xnoiseifier

functional-random-forest

Functional Analysis with Random Forests

gcn_tutorial_test

h5py

HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.

hcppipelines

hcppipelines-1

hcppipelines_status

hcpre

A Nipype Workflow for the HCP Preprocessing Pipelines

hello-world

testing container for singularity hub

heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts