Jean-Yves Tinevez's Projects
https://adventofcode.com/2022/
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
A Fiji plugin for the automated detection and quantification of circular structure in images.
From the paper
An imagej/fiji plugin for interactive segmentation of 3D
A client implementation of ELEPHANT
Addons for TrackMate in ImageJ
A generic next-generation Java library for image processing
Image processing algorithms for ImgLib2
imglib2-icy ImgLib2 wrappers for Icy.
ImgLib tests that are not bound to specific ImgLib projects
Interactive image visualization using ImgLib2
Demo for the ImgLib2 Icy wrapper.
Sphinx extension for documenting Java projects - DEPRECATED
Icy KymographTracker.
Advanced Tool for Labeling And Segmentation
Template repo made for elaborating LaTeX documents that are automatically compiled and published with github actions.
Playground to see if a Mesh implementation using Mastodon is useful.
A MATLAB class to represent the tree data structure.
Tentative complex Fourier filtering for D. Sage team.
A MATLAB class for Mean Square Displacement analysis.
Code and images for the Springer book: Bioimage Data Analysis Workflows, edited by Kota Miura and Nataša Sladoje
NEUBIAS Bioimage Analyst School 2019
Omnipose: a high-precision solution for morphology-independent cell segmentation
Perona & Malik anisotropic diffusion for Icy using ImgLib2
My (JYT) Python solutions to the Euler Project problems (https://projecteuler.net/)