tims-ml Goto Github PK

18s191

Course 18.S191 at MIT, Spring 2021 - Introduction to computational thinking with Julia:

alphafold

Open source code for AlphaFold.

alphafold2-lucidrains

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

alphalink

AlphaLink: Integrating crosslinking-MS data into OpenFold

boring-llm-implementation

So... do you like nanoGPT, litgpt and x-transformer?

chatgpt-google-extension-noads

A browser extension that enhance search engines with ChatGPT

chatlm-mini-chinese

中文对话0.2B小模型（ChatLM-Chinese-0.2B），开源所有数据集来源、数据清洗、tokenizer训练、模型预训练、SFT指令微调、RLHF优化等流程的全部代码。支持下游任务sft微调，给出三元组信息抽取微调示例。

coati

COATI: multi-modal contrastive pre-training for representing and traversing chemical space

colabdock

Code for ColabDock paper

colabfold

Making Protein folding accessible to all!

convnetjs

Deep Learning in Javascript. Train Convolutional Neural Networks (or ordinary ones) in your browser.

cpython-internals-note

d2l-jax-colab

d2l-pytorch-colab

Automatically Generated Notebooks for Colab

datamining

ddpm-proteins

A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms

deeprank-gnn-esm

Graph Network for protein-protein interface including language model features

det3d

A general 3D object detection codebse.

diffdock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

difflinker

DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design

diffsbdd

A Euclidean diffusion model for structure-based drug design.

dynamicbind

repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model

e3_diffusion_for_molecules

egnn-pytorch

Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch

en-transformer

Implementation of E(n)-Transformer, which extends the ideas of Welling's E(n)-Equivariant Graph Neural Network to attention

evodiff

Generation of protein sequences and evolutionary alignments via discrete diffusion models

fastertransformer

Transformer related optimization, including BERT, GPT

flash-attention-jax

Implementation of Flash Attention in Jax

generative_agents

Generative Agents: Interactive Simulacra of Human Behavior

geodock

Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.