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Tim CD Lucas

I am a lecturer in the Dept. of Health Sciences at the University of Leicester. My interests encompass statistical methods and mathematical models for studying disease. In particular Iā€™m interested in studying methods that account for multiple temporal or spatial scales. For example, disease progression or diagnosis is typically quite a slow process, but we are exposed to environmental factors such as air pollution every second. Depending on our movement patterns, we can have very different exposures from one minute to the next.

I have a continuing interest in infectious disease models and statistical methods for ecology. Recently this has involved developing models of contact tracing to help guide COVID-19 policy. Previously, I worked as a Research Fellow at Imperial College. Before that I worked with Deirdre Hollingsworth and the Malaria Atlas Project at the Big Data Institute, University of Oxford on neglected tropical diseases and malaria.

Please feel free to email me to discuss stats, modelling, R or anything else. If you are a student looking for opportunities such as masters or PhD projects please email to say hello. There are studentships or pre-doctoral fellowships we could develop a project for. My address is tim.lucas ā€” at ā€” le.ac.uk. Or you can say hello on twitter @timcdlucas or @StatsForBios.

Tim Lucas's Projects

abundance-density-manuscript icon abundance-density-manuscript

Repository for "Role of inter-related population-level host traits in determining pathogen richness and zoonotic risk" by lucas et al.

agouti icon agouti

AGgregate OUtcomes Ish. Models, utility functions and data visualisation for aggregate outcomes analyses.

cv icon cv

Just my cv LaTeX files etc.

dplyr icon dplyr

dplyr: A grammar of data manipulation

emmli icon emmli

A Maximum Likelihood Approach To The Analysis Of Modularity

knitr-thesis icon knitr-thesis

A template for using multiple knitted documents in a thesis for example

lucasmoorcroftmanuscript icon lucasmoorcroftmanuscript

Manuscript files for gREM paper "A generalised random encounter model for estimating animal density with remote sensor data"

modules icon modules

modules for each component of an SDM workflow, for use with the zoon R package

polygon_ml icon polygon_ml

Code for Improving disaggregation models of malaria incidence by ensembling non-linear models of prevalence

polygon_ml_ms icon polygon_ml_ms

Repository for manuscript Improving disaggregation models of malaria incidence by ensembling non-linear models of prevalence

randem icon randem

Random Encounter Modelling in R

rempaper icon rempaper

Old analytical work (mostly) for gREM paper.

riskr icon riskr

R package for simulations of Hasbro's Risk (and other game) .

rusers-caret-zoon icon rusers-caret-zoon

Talk on two R packages, caret and zoon. Presenting to the Oxford rusers group. I'll discuss the scope and uses of both packages. I'll also discuss whether domain specific package ecosystems (which zoon aims to be) are a good idea and what makes them useful, difficult and different.

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