Comments (6)
Thanks @Imoteph, this looks like an issue we have seen before in combined VCF export. Which version of TileDB-VCF were you using? If it's possible for you to share the VCF files, we can reproduce and debug further.
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I am using the latest docker image, but I am not able to share here the vcf files. I can just say that these gvcfs were done with the gatk pipeline.
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any potential hint, on how I could maybe debug this error?
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Thanks for the offer. We've reproduced the error and are working on a fix.
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Please try release 0.23.1.
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Thx, I will close this issue for now.
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Related Issues (20)
- export with -m (merge) option HOT 3
- tiledb-vcf-java jar doesn't include native libraries HOT 11
- The nightly build job failed on Thursday (2024-01-25) HOT 1
- The nightly build job failed on Wednesday (2024-02-07) HOT 11
- Cannot submit_and_finalize query HOT 2
- Java API: Request to support loading Mac-ARM libraries HOT 1
- The nightly build job failed on Monday (2024-02-26) HOT 1
- The nightly build job failed on Tuesday (2024-02-27) HOT 1
- The nightly build job failed on Tuesday (2024-03-12) HOT 1
- The nightly build job failed on Wednesday (2024-03-20) HOT 1
- delete sample from database: segmentation fault on CLI HOT 5
- The nightly build job failed on Wednesday (2024-04-03) HOT 2
- The nightly build job failed on Friday (2024-04-05) HOT 5
- The nightly build job failed on Saturday (2024-04-20) HOT 1
- Some questions about functionality HOT 3
- [Backport release-0.31] Failed to backport #708
- [Backport release-0.31] Failed to backport #712
- The new scikit-build-core setup copies external shared objects into Python wheel HOT 4
- The nightly build job failed on Wednesday (2024-05-15)
- The nightly build job failed on Wednesday (2024-05-29) HOT 6
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