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thomashmac's Projects

ants icon ants

Advanced Normalization Tools (ANTs)

datman icon datman

scripts for managing xnat, QC, and data analysis

dmriprep icon dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

niviz icon niviz

Extensions to niworkflows and nipype for flexible visualization and reporting of pre-existing outputs

personalized-e-fields icon personalized-e-fields

Simulate personalized e-fields and computed the overlap between connectivity and e-field maps

simnibs icon simnibs

Simulation of Non-Invasive Brain Stimulation

simnibs_tutorial icon simnibs_tutorial

Short tutorial on using the SimNIBS API and mapping TMS Tech coil angles

tractify icon tractify

Tractography pipeline for preprocessed DWIs

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