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bst_2017_gear-shifting

Figure 5 - Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters

fosbe_2016

"Maps for when the living gets tough: Maneuvering through a hostile energy landscape" | Mondeel, Thierry D.G.A. Rehman, Samrina Zhang, Yanfei Verma, Malkhey Dürre, Peter Barberis, Matteo Westerhoff, Hans V. | 2016 | IFAC-PapersOnLine |

fosbe_2018

Reproduction of figures from "T.D.G.A. Mondeel, S. Astrologo, Y. Zhang, H. V. Westerhoff, NET works after all? Engineering robustness through diversity, IFAC-PapersOnLine. 51 (2018) 128–137."

glutathione_biomarkers

Flux balance analysis for biomarker prediction: A limited proof and in-silico test for glutathione mediated drug-detoxification | Thierry D.G.A. Mondeel, Vivian Ogundipe, Shintaro Nakayama and Hans V. Westerhoff | 2019

hcc_flux_balance_analysis

Simultaneous Integration of Gene Expression and Nutrient Availability for Studying the Metabolism of Hepatocellular Carcinoma Cell Lines | Ewelina Węglarz-Tomczak, Thierry D.G.A. Mondeel, Diewertje G.E. Piebes, Hans V. Westerhoff | Biomolecules 2021

reproduce_nagarajan_2013_table_1

Code to reproduce Table 1 from Nagarajan et al., 2013

rescience-submission-shlomi2009

ReScience submission repository

systems_biology_fba_tutorial

Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam

tabular_synthetic_data

Investigate the currently available algorithms to generate synthetic tabular data for governmental use

thierrymondeel

thierrymondeel.github.io