thibautjombart Goto Github PK

adegenet

adegenet: a R package for the multivariate analysis of genetic markers

adegenet_docker

Docker images for the R package adegenet

apex

Phylogenetic Methods for Multiple Gene Data

bmmix

Bayesian multinomial mixture model

branching_basics

Basic code for branching process simulators.

contact_tracing_optim

Evaluation of contact tracing optimisation method

covid19_bed_occupancy

Shiny app providing estimates of future bed occupancy given recent admissions

covid19_cases_from_deaths

Shiny app to infer caes from new deaths of COVID-19

cv

My cv

distcrete

:chart_with_upwards_trend::point_right::bar_chart: Discretise distributions

drat

Drat repository (testing for now)

eatr

Food stuff in R

encryptr

epichange

New method to detect recent changes in incidence trends

epirecipes

contributions to Simon Frost's epirecipes

fancysamplers

fancy samplers

hellorivm

hugo-initio-site

Example web site for the Hugo-Initio theme

learn

RECON's platform for teaching

lecture-phylogenetics

LaTeX (beamer) slides of a phylogenetics lecture

mers_camel_mod

misc

Collection of random, potentially useful stuff.

misc_figures

misc collection of figures used in publication, training etc.

nhs_pathways_monitoring

Real-time monitoring of potential COVID-19 cases reported through NHS pathways data

outbreaker

Disease outbreak reconstruction from epidemiological and genetic data

outbreaktools

Basic Tools for the Analysis of Disease Outbreaks

palettonr

R package to import and handle palettes from paletton.com

pegas

Population and Evolutionary Genetics Analysis System

quicksim

quick outbreak simulation script

rweekly.org

R Weekly