Comments (2)
johannesostner
commented on June 12, 2024
Hi, thanks for your interest in scCODA!
There are multiple ways to save the results objects in scCODA.
The two tables for intercepts and effects that you see in result.summary() are pandas DataFrames, which can be saved as csv's by result.intercept_df.to_csv(path_to_file) and result.effect_df.to_csv(path_to_file), respectively.
You can also dump the whole results object via pickle: result.save(path_to_file). This allows you to re-load the class with all its functions later, but is probably not what you are looking for for further analysis.
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Zifeng-L
commented on June 12, 2024
Got it! Thanks again!
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