Exit code 134 about sccoda HOT 6 CLOSED

Hi Rachelly,
thanks for reporting this error!

This seems to be an issue related to tensorflow. Could you please provide the version numbers of your tensorflow, tensorflwo-probability and scCODA installations?
Also, are you trying to run scCODA on a cluster? The error resource temporarily unavailable could also be related to that.

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Hi johannesostner,
Here are my software versions:
scCODA: 0.1.4
tensorflow: 2.6.0
tensorflow-probability: 0.14.0

And yes, I am using a cluster.

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I am unsure whether this is the cause of the error, but the package versions you use are not tested with scCODA. The package is tested against tensorflow 2.4 and tensorflow-probability 2.6. There was an oversight on our side in the 0.1.4 version of scCODA, where the latest versions of both packages were always installed, instead of the recommended ones.
Please try downgrading these two packages and upgrading scCODA to 0.1.6.

I hope that this fixes your problem!

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Thank you again.
After upgrading to scCODA 0.016, tensorflow 2.4 and tensorflow-probability 0.12 (there is no version 2.6), this error message is gone!

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@johannesostner pinning Tensorflow to >=2.4 < 2.6 solves the issue, but is rather restrictive for environments which use more tools than sccoda. Would it be possible to identify and fix the root cause?

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The latest version of scCODA (0.1.7) are compatible with the latest tensorflow (2.8.0) and tensorflow-probability (0.16.0) versions. I could not reproduce the error described here, though. Closing this for now.

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