Comments (2)
AnnaChristina
commented on May 24, 2024
Hi @archanabhardwaj,
thank you for your interest in running ncem on your own data.
Please store .X as sparse matrix format and the stated code will work. However, the stated tutorial is specifically designed for targeted spatial omics data. You can still use the stated tutorial, but we will also push a specific tutorial for deconvoluted visium soon.
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AnnaChristina
commented on May 24, 2024
I am closing the issue for now, but feel free to open it again in case of further questions.
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