theinnuendoproject Goto Github PK
Name: Innuendo project
Type: User
Bio: A novel cross-sectorial platform for the integration of genomics in surveillance of foodborne pathogens
Name: Innuendo project
Type: User
Bio: A novel cross-sectorial platform for the integration of genomics in surveillance of foodborne pathogens
BSR-Based Allele Calling Algorithm
wgMLST schemas formatted for chewBBACA for food-borne pathogens
A Nextflow pipeline assembler for genomics :whale::package:
Get fastq files from ENA using Run IDs
Introduction to bioinformatics for microbiologists (Uni Helsinki)
INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search
Docker-compose for INNUENDO Platform deployment
INNUENDO Process controller source code wiht integration with Nextflow
Frontend application and REST API for the INNUENDO Platform
Problem-solving based course for Linux
Bioinformatic course on bacterial genomics and metagenomics Helsinki December 2017
R scripts for performing analysis of cluster stability of cgMLST allele profile database using the Neighbourhood Adjusted Wallace Coefficient (nAWC)
In silico pathogenic typing directly from raw Illumina reads
Reads mapping against target sequences, checking mapping and consensus sequences production
Determine which reference sequence is more likely to be present in a given sample
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