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fflmediation

R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.

gehlenborglab-website

Code for Gehlenborg Lab website.

mbr-for-nmt

Characterizing the performance of minimum Bayes risk (MBR) decoding for neural machine translation (NMT) when using various candidate generation methods by examining BLEU score, length bias, and token frequency bias. [CS287: Deep Learning for Natural Language Processing, Final Project, Fall 2021]

medalpaca

LLM finetuned for medical question answering

meditron

Meditron is a suite of open-source medical Large Language Models (LLMs).

megatron-llm

distributed trainer for LLMs

th789.github.io

vitessce-shiny

R Shiny app for Vitessce, an integrative and interactive data visualization tool for exploration of spatial single-cell experiments.