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ad_projects

coeds related to ad related projects

ampad-diffexp

Code base for performing covariate adjustments and differential expression analysis of the RNAseq data from AMP-AD.

ampad_crossnetworkcomparison

Repository for analysis scripts from Accelerating Medicine Partnership Cross Network Comparison Group

ampad_heatmap

Shiny app for AMP-AD heatmap

ampadscripts

Scripts to migrate data from internal partner sites to public web-site

brain_reg_net

Gene regulatory network from mRNA data of brain

celltypedeconvolution

Repository to host codes to estimate member cell type abundances from cell population, using gene expression data.

cmc

common-mind-consortium-causal-regulatory-networks

commoncompute

Common compute resources for Sage data scientists

covariateanalysis

cranio

datamerge

ensembleenrichment

Pathway enrichment analysis pipelines build from different sources

howdoi

howdoi - instant coding answers via the command line

igraph

Library for the analysis of networks

knit2synapse

Functionality to knit RMarkdown documents to Synapse wiki pages.

metanetwork

metanetworksynapse

mhealthtools

mpower_data_analysis

Analysis pipelines for mPower data

mpowertools

feature extraction toolkit for mPower modules

pcbc_c4_analysis

Analysis of C4 data

pdscores

rgithubclient

Making it easier for R to talk to github

rneo4j

Interact with a Neo4j database in R.

rsynapseclient

The R programmatic interface to Synapse services

rsynapseutilities

Utilities for use with the R Synapse Client

sagebrownbagdemo

Demo materials for Sage Brown Bag Seminar

sagecoexpressionnetworks