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cada-vae-pytorch

Pytorch implementation of the paper "Generalized Zero- and Few-Shot Learning via Aligned Variational Autoencoders" (CVPR 2019)

cellview

Simple App to visualize 10X single cell datasets

chemvae

disentangling-vae

Experiments for understanding disentanglement in VAE latent representations

fasta-to-gtf

a script which takes a de novo transcriptome assembly [fasta format], a reference genome [fasta file], and RNAseq reads [fastq format] as input, and outputs a gtf file

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

vde

Variational Autoencoder for Dimensionality Reduction of Time-Series