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amplicon

api-testing

test script and data for MG-RAST API tests

autoskewer

Repository for wrapper scripts for adapter trimming of high throughput sequence data, mostly illumina.

awe

workflow and resource management system for bioinformatics data analysis

awe_service

The awe_service repository provides KBase release engineering tools for the deployment of the AWE client and server. The AWE repository is included as a submodule in the awe_service repository and is maintained at http://github.com/MG-RAST/AWE.

communities_api

dev_container

This repository is a container for developing and deploying KBase modules. To use this, you must already have a "runtime" directory, which contains the neccesary binaries and libraries. For an idea of what is expected to be in this runtime, consult the [bootstrap repository](https://git.kbase.us/bootstrap.git/).

drisee

duplicate read inferred sequencing error estimator

ebi-submitter

Tools for submitting public MG-RAST jobs to the EBI's ENA archive

go-shock-client

go client library for Shock

golib

ipy-mkmq

IPython Tools for analysis in MG-RAST KBase MatR QIIME

ipy-nbo

ipython1.1

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

ipython3

Fork of IPython 3 (dev)

mg-rast

metagenomic analysis server site code

mg-rast-analysis

module to deploy IPython in the MG-RAST / KBase enviroment

mg-rast-exporter

mg-rast-tools

Repository of script tools, examples, and contributed code for using the MG-RAST API

mg-rastv4

next generation metagenome analysis

mgrast_pipeline

mixs

“Minimum Information about any (X) Sequence” (MIxS) specification

narrative

narrative_job_service

narrative_method_specs

narrative_method_specs_sandbox

Sandbox for experimenting with narrative method specs.

narrative_method_store

openstackmaster

Perl script and modules for the instantiation of, configuration of and communication with multiple VMs in an Openstack environment

pipeline

metagenomic analysis server pipeline scripts

retina