Name: Kivumbi Mark Tefero
Type: User
Bio: MSc Bioinformatics, Microbial ecology, host-parasite interactions, reproducibility and open access, workflow languages (nextflow, snakemake), data viz.
Twitter: kivumbimark
Location: Kilifi, Kenya. Kampala, Uganda
Kivumbi Mark Tefero's Projects
Analysis of (gut) microbiome in Qiime2 and R.
This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio
A curated list of delightful Bash scripts and resources.
It works on terminal made in Python 3
JupyterBook for QIIME 2 FAES January 2022 workshop
Sends downloaded files to user-defined folders automatically. Avoids cluttering your downloads folder.
Workflow for qiime2 workshop
Instructor Training
An Introductory repo for maintainers, collaborators and the bioinformatics community at large
Machine Learning for Genomics Course.
Fork this repository and make changes to the README
Updated materials for MSc Bioinformatics for Pwani University
A Meta-barcoding pipeline for analysing Illumina data in QIIME2 framework
Data Analysis and Visualization in R for Ecologists
R for Reproducible Scientific Analysis
The project explores RNASeq analysis pipelines and their codes/scripts. Comparison report between the pipelines is provided at the end of analysis with preferred tools outline.
16s rRNA gene amplicons analysis written with Snakemake workflow manager and Quantitative Insights into Microbial Ecoloy QIIME2 version 2022.11
Preprocessing and downstream analysis of 16S and ITS reads (Qiime2 and phyloseq, vegan, ampvis2 in R)