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canberrarevised

A revised version of the Canberrra distance measurement program found in the iPlant Collaborative Discovery Environment.

demonstrate

An R script version of the Demonstrate package for future use on the Stampede supercomputer.

dockerfiles

Dockerfiles for Validate Workflow Docker images

gxe-sim-data

Data and conversion codes for running the outputs from the BMC Genetics paper written by Saidou et al.

iplant-agave-sdk

ipython_intermediate

iPython notebook for intermediate Python

metagenomic-analysis

Necessary codes and outputs for analyzing abundances in metagenomic data

metagenomic-analysis-part-2

A second version of the original elastic net analysis with samples 9 and 10 removed.

project-notebook

An iPython notebook for detailing objectives progress

simuyieldlists

R script for generating ranked lists from iPlant simulation data

stock-analyzer

Python program for running quantitative analysis and intrinsic value calculation for stocks using existing valuation formulas and data pulled from Morningstar and

test-list-generator

Program for generating test data for iplant Canberra Distance app

updated-demonstrate

validate

Known-truth testing for genome-wide association tools; updated for python from the ktar project

validate-master2

The main code repository for the Validate software. This sub-repository will include both stable releases and versions currently under development.