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anaerobic-benzene-degrading-culture

Code repository for Chrats paper

analysis-of-eda-data

cbmpy

CBMPy is a Python based platform for constraint based modelling and analysis.

cbmpy-metadraft

CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool

cbmpy-metadraft-templates

Template models for MetaDraft

dynamic-community-fba

Dynamic Community FBA repository

ecmtool

Uncover organisms' metabolic blueprints

elementary-mode-based-fba-rationale

Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutrients and the objective function. As published in Metabolites https://doi.org/10.3390/metabo11050257

funciminer

hilic-ms-detrending

memesa-tools

This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function

metadraft

MetaToolkit-MetaDraft GUI based reconstruction of genome scale metabolic models

parcr

Construct parser combinators in R

pub-data

Repository for published, public supplementary material (archived, for new data please use a data repository)

sbl-template-pub

Template for new SysBioLab repositories

stochpy

StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks

vonda

VoNDA: Visualization of Network DAta

yeast_metabolic_map

visualisation of the yeast metabolic network